Intet billede af Jan Baumbach

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Jan Baumbach

Professor

 https://orcid.org/0000-0002-0282-0462
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  • 2023

    Human-in-the-Loop Integration with Domain-Knowledge Graphs for Explainable Federated Deep Learning

    Holzinger, A., Saranti, A., Hauschild, A. C., Beinecke, J., Heider, D., Roettger, R., Mueller, H., Baumbach, J. & Pfeifer, B., 2023, Machine Learning and Knowledge Extraction - 7th IFIP TC 5, TC 12, WG 8.4, WG 8.9, WG 12.9 International Cross-Domain Conference, CD-MAKE 2023, Proceedings. Holzinger, A., Holzinger, A., Holzinger, A., Kieseberg, P., Cabitza, F., Campagner, A., Tjoa, A. M., Weippl, E. & Weippl, E. (red.). Springer Science+Business Media, s. 45-64 (Lecture Notes in Computer Science, Bind 14065 LNCS).

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

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  • 2021

    On the Privacy of Federated Pipelines

    Nasirigerdeh, R., Torkzadehmahani, R., Baumbach, J. & Blumenthal, D. B., 11. jul. 2021, SIGIR 2021 - Proceedings of the 44th International ACM SIGIR Conference on Research and Development in Information Retrieval. Association for Computing Machinery, s. 1975-1979 3462996

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • 2018

    Weighted gene co-expression network analysis of microarray mRNA expression profiling in response to electroacupuncture

    Mohammadnejad, A., Li, S., Duan, H., Lund, J., Li, W., Baumbach, J. & Tan, Q., dec. 2018, Proceedings of the 2018 IEEE International Conference on Bioinformatics and Biomedicine. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (red.). IEEE, s. 1876-1883 8621258

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • 2016

    A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection in Biological Networks

    Larsen, S., Alkærsig, F. G., Ditzel, H., Jurisica, I., Alcaraz, N. & Baumbach, J., 2016, GECCO 2016 - Proceedings of the 2016 Genetic and Evolutionary Computation Conference. Friedrich, T. (red.). Association for Computing Machinery, s. 341-348

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • 2014

    Compactness-Preserving Mapping on Trees

    Baumbach, J., Guo, J. & Ibragimov, R., 2014, Combinatorial Pattern Matching - 25th Annual Symposium, CPM 2014, Proceedings. Kulikov, A. S., Kuznetsov, S. O. & Pevzner, P. (red.). Springer, s. 162-171 10 s. (Lecture Notes in Computer Science, Bind 8486).

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • Complexity of Dense Bicluster Editing Problems

    Sun, P., Guo, J. & Baumbach, J., 2014, Computing and Combinatorics - 20th International Conference, COCOON 2014, Proceedings: 20th International Conference, COCOON 2014, Atlanta, GA, USA, August 4-6, 2014. Proceedings. Cai, Z., Zelikovsky, A. & Bourgeois, A. (red.). Springer, s. 154-165 12 s. (Lecture Notes in Computer Science, Bind 8591).

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • Efficient large-scale bicluster editing

    Sun, P., Baumbach, J. & Guo, J., 2014, Proceedings of the German Conference on Bioinformatics 2014. Hofestadt, R., Nattkemper, T. W. & Giegerich, R. (red.). Gesellschaft für Informatik (GI) e.V, Bind P-235. s. 54-60 (Lecture Notes in Informatics, Bind P-235).

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • Multiple Graph Edit Distance: Simultaneous Topological Alignment of Multiple Protein-protein Interaction Networks with an Evolutionary Algorithm

    Ibragimov, R., Malek, M., Baumbach, J. & Guo, J., 2014, Proceedings of the 2014 Conference on Genetic and Evolutionary Computation. Association for Computing Machinery, s. 277-284 8 s.

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • On the limits of computational functional genomics for bacterial lifestyle prediction

    Barbosa, E., Röttger, R., Hauschild, A.-C., Azevedo, V. & Baumbach, J., 2014, German Conference on Bioinformatics 2014. Giegerich, R., Hofestädt, R. & Nattkemper, T. W. (red.). Gesellschaft für Informatik (GI) e.V, s. 79-84 (Lecture Notes in Informatics, Bind P-235).

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • 2013

    Cluster editing

    Böcker, S. & Baumbach, J., 1. jan. 2013, The Nature of Computation: Logic, Algorithms, Applications: 9th Conference on Computability in Europe, Cie 2013, Milan, Italy, July . Bonizzoni, P., Brattka, V. & Löwe, B. (red.). Springer, s. 33-44 12 s. (Lecture Notes in Computer Science, Bind 7921).

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • Covering tree with stars

    Baumbach, J., Guo, J.-Y. & Ibragimov, R., 2013, Computing and Combinatorics: 19th International Conference, COCOON 2013, Hangzhou, China, June 21-23, 2013. Proceedings. Du, D.-Z. & Zhang, G. (red.). Springer, s. 373-384 12 s. (Lecture Notes in Computer Science, Bind 7936).

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • GEDEVO: An Evolutionary Graph Edit Distance Algorithm for Biological Network Alignment

    Ibragimov, R., Malek, M., Guo, J. & Baumbach, J., 2013, German Conference on Bioinformatics 2013. Beißbarth, T., Kollmar, M., Leha, A., Morgenstern, B., Schultz, A.-K., Waack, S. & Wingender, E. (red.). Schloss Dagstuhl-Leibniz-Zentrum fuer Informatik, Bind 34. s. 68-79

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

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  • NABEECO: Biological network alignment with bee colony optimization algorithm

    Ibragimov, R., Martens, J., Guo, J.-Y. & Baumbach, J., 2013, GECCO 2013 - Proceedings of the 2013 Genetic and Evolutionary Computation Conference Companion. s. 43-44

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review

  • 2012

    Online transitivity clustering of biological data with missing values

    Röttger, R., Kreutzer, C., Vu, T. D., Wittkop, T. & Baumbach, J., 1. jan. 2012, German Conference on Bioinformatics 2012, GCB 2012. Böcker, S., Hufsky, F., Scheubert, K., Schleicher, J. & Schuster, S. (red.). Schloss Dagstuhl-Leibniz-Zentrum fuer Informatik, s. 57-68 (OpenAccess Series in Informatics, Bind 26).

    Publikation: Kapitel i bog/rapport/konference-proceeding › Konferencebidrag i proceedings › Forskning › peer review